Bookkeeping Services for Ecommerce Businesses
eCommerce bookkeeping has to account for sales across Shopify, Amazon, and every channel you sell on, reconciled against merchant deposits, COGS, and returns.
Profitjets provides bookkeeping services built for multi-channel sellers, tracking inventory costs, merchant fees, and sales tax nexus across every state you have exposure in.
Our tax services identify economic nexus before it becomes a penalty, and our accounting services show your real per-product margin. Whether you're on one platform or five, we keep your books accurate and audit-ready.
+ many more
after fees & COGS
tracked by state
Financial Management for Online Stores
Multi-channel sales, inventory, and fees reconciled so you see your real profit per order.
Multi-channel sales
Shopify, Amazon, and marketplace sales reconciled into one clean set of books.
COGS & inventory
Cost of goods and inventory tracked so margins are accurate.
Merchant & platform fees
Processor and marketplace fees captured against each payout.
Sales tax nexus
Nexus tracked by state so you collect and file where required.
Returns & refunds
Returns, refunds, and chargebacks tracked so revenue stays accurate.
Payout reconciliation
Platform payouts reconciled against orders, fees, and deposits.
Ecommerce Tax Planning & Sales Tax Compliance
eCommerce brands build up sales-tax nexus and misjudge margins when fees and COGS are not captured. We keep records that make filing clean and profit clear.
Know the Real Profit Behind Every Sale
Revenue doesn't tell the full story. We connect your sales, inventory, fulfillment costs, platform fees, and operating expenses into clear financial reports, helping you understand product margins, improve cash flow, and make smarter strategy.
Before Profitjets
- Sales, fees, and refunds jumbled in one deposit line
- No reliable margin after platform fees and COGS
- Sales-tax nexus building up unnoticed across states
- Inventory value guessed at instead of tracked
With Profitjets
- Every payout reconciled into orders, fees, and refunds
- True profit per order after fees and cost of goods
- Nexus tracked by state so filings stay compliant
- Inventory and COGS tracked for accurate margins
What eCommerce Brands Say
Multi-Channel Sales Finally Reconciled in One Place
“We sell on Shopify, Amazon, and our own site, and reconciling all three against our bank deposits used to take days every month. Profitjets outsourced bookkeeping services connected all our channels and now it's automatic. I finally trust the revenue number I see without double-checking it myself.”
Sales Tax Nexus Caught Before It Became a Problem
“We had no idea we'd triggered economic nexus in six states just from Amazon FBA inventory sitting in their warehouses. Profitjets tax services identified every state and got us registered before a single notice arrived. That alone probably saved us thousands in penalties we never even knew we were exposed to.”
COGS Finally Reflected Our Actual Margins
“Our inventory costing was a mess of estimates, so we genuinely didn't know our real margin on half our SKUs. Profitjets bookkeeping services fixed our COGS tracking and now we know exactly what each product actually earns us. We've since discontinued two products that were quietly losing us money.”
Bookkeeping Services for Every Ecommerce Business
Whether you're selling through Shopify, Amazon, Walmart, Etsy, or multiple online channels, our bookkeeping services adapt to your business model and provide the financial clarity needed to scale.
Shopify Brands
Manage Shopify payouts, payment processor fees, inventory, and customer refunds with bookkeeping designed for growing DTC brands.
Amazon Sellers
Track Amazon settlements, FBA fees, advertising costs, inventory, and marketplace tax obligations with confidence.
Multi-Channel Retailers
Bring together sales from every marketplace into one accurate set of books for easier reporting and better decision-making.
Subscription Ecommerce
Monitor subscription income, deferred revenue, inventory, and customer retention metrics with bookkeeping tailored to recurring sales.
Questions, answered
Yes. We reconcile payouts, fees, refunds, chargebacks, and sales across every platform, giving you accurate books and a complete view of revenue. That means no more guessing whether Shopify deposits actually match what you sold.
We organize inventory purchases and cost of goods sold accurately, helping you understand true margins and maintain reliable financial reporting. That visibility shows you exactly which SKUs are actually profitable after landed costs.
Yes. We maintain tax-ready financial records, track taxable sales by state, and support multi-state sales tax compliance as your business grows. That keeps you ahead of nexus thresholds instead of finding out after the fact.
We record returns, exchanges, refunds, and payment processor adjustments accurately, ensuring your revenue reflects actual sales performance. That prevents inflated revenue numbers that don't hold up once returns are factored in.
Yes. Whether you sell through Shopify, Amazon, Walmart, or your own website, our bookkeeping scales with your business while keeping financial reporting accurate. That means adding a new channel never means losing visibility into overall performance.
Services for this industry
Also built for SaaS Companies, Logistics and Rental Businesses.
Track Your Ecommerce Profits Today
Book a free consultation and we'll map out exactly how we'd handle your eCommerce bookkeeping and tax.