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Logistics accounting

Bookkeeping Services for Logistics Companies

Logistics companies need bookkeeping that tracks freight billing, carrier settlements, and warehouse costs separately, since blending them hides which shipments actually make money.

Profitjets provides bookkeeping services built for logistics companies, reconciling carrier settlements automatically and allocating warehouse costs by client or contract.

Our logistics company accounting services reveal per-shipment margin, so you know which lanes and contracts are actually profitable. We help logistics businesses catch underpriced contracts before they quietly erode margin.

Works with the tools you already use
QuickBooks NetSuite Bill.com Xero + many more
Margin per shipment
freight in vs out
Carrier settlements
reconciled cleanly
What we handle

Ongoing Bookkeeping for Logistics Operations

From freight revenue and fuel expenses to driver payroll, maintenance costs, and monthly reconciliations, we manage the financial operations that keep your logistics business running efficiently and your books accurate.

01

Freight billing & revenue

Customer freight billing reconciled and recognized correctly.

02

Carrier settlements & payables

Carrier costs and settlements reconciled against each shipment.

03

Per-shipment margin

Freight in versus freight out tracked so margin is clear per load.

04

Warehouse & storage costs

Warehouse, handling, and storage costs allocated accurately.

05

Accessorials & surcharges

Detention, fuel surcharges, and accessorials captured and billed.

06

Accounts receivable

Customer receivables and aging reconciled every month.

Industry tax

Tax Planning & Compliance for Logistics Companies

Transportation companies face changing tax rules and operating costs. We maintain tax-ready financial records, track deductible expenses, and help you stay compliant with federal and state tax requirements throughout the year.

Multi-state & nexus 1099 carrier filing Section 179 & depreciation Sales tax where applicable Cash vs accrual method Quarterly estimated taxes
The difference

Why Logistics Companies Choose Profitjets

Running a logistics business requires timely financial information. We provide accurate bookkeeping and meaningful reporting that help you control operating costs, improve cash flow, and make confident decisions as your business grows.

Before Profitjets

  • No clear margin on individual shipments or lanes
  • Carrier costs reconciled by hand against invoices
  • Accessorials and surcharges slipping through unbilled
  • Warehouse costs lumped into one overhead line

With Profitjets

  • Margin tracked per shipment, lane, and customer
  • Carrier settlements reconciled automatically
  • Accessorials and surcharges captured and billed
  • Warehouse and handling costs allocated accurately
Clients

What Logistics Companies Say

Anthony Vaccaro
Owner, Vaccaro Freight Solutions

Per-Shipment Margin We Finally Had Visibility Into

“We knew our overall margin but had no idea which shipments or lanes were actually profitable. Profitjets bookkeeping services built per-shipment margin tracking, and we found out we were losing money on an entire regional lane. We renegotiated our rates on that lane within a month of finding out.”

Denise Okwuosa
CFO, Okwuosa Logistics Group

Carrier Settlements Reconciled Without the Manual Work

“Reconciling carrier settlements against our own freight billing used to take one of our staff most of a week every month. Profitjets outsourced bookkeeping services automated the matching, and that same reconciliation now takes an afternoon. That person now spends their time on things that actually grow the business.”

Marcus Delfino
Founder, Delfino 3PL Partners

Warehouse Costs Finally Allocated Correctly

“Our warehouse operating costs were dumped into one general expense line instead of allocated by client or contract. Profitjets accounting services separated it out, and we found two client contracts that were actually priced below our real cost to serve them. Both have since been renegotiated.”

Who it's for

Bookkeeping for Growing Logistics Companies

Whether you manage a small fleet or operate a nationwide transportation business, our bookkeeping services adapt to your operations and provide the financial visibility needed to support sustainable growth.

Long-Haul & Regional Carriers

Freight & Trucking Companies

Track freight revenue, fuel costs, maintenance expenses, tolls, and driver payroll with bookkeeping built for trucking businesses.

Warehousing & Distribution

Third-Party Logistics (3PL) Providers

Manage customer billing, warehouse expenses, carrier payments, and operational costs with organized bookkeeping and reliable financial reporting.

High-Volume Delivery Operations

Courier & Last-Mile Delivery Companies

Monitor delivery revenue, contractor payments, vehicle expenses, and route costs with bookkeeping designed for fast-moving delivery businesses.

Vehicle-Intensive Operations

Fleet Management Companies

Keep fleet expenses, maintenance schedules, depreciation, insurance costs, and asset performance organized with bookkeeping tailored to fleet operators.

FAQ

Questions, answered

We categorize fuel, maintenance, repairs, tolls, insurance, and other operating costs by vehicle or fleet, giving you a clear picture of transportation expenses and profitability.

Yes. We organize financial records across multiple vehicles, terminals, warehouses, or business locations, providing consolidated reporting and location-level financial visibility.

We record payroll, contractor payouts, reimbursements, and related operating expenses accurately, helping your business maintain organized records and prepare for tax reporting.

Yes. We organize revenue and expenses so you can evaluate profitability by route, customer, or service line, helping you identify opportunities to improve margins.

Yes. We maintain organized financial records, track multi-state business activity, and prepare your books for accurate tax filing while supporting compliance with applicable state tax requirements.

Related services

Services for this industry

Common in Transportation, Trucking and eCommerce.

Know the Margin on Every Shipment You Move

Book a free consultation and we'll map out exactly how we'd handle your logistics bookkeeping and tax.